Vito Flavio Licciulli
Socio Ordinario
Ricercatore
CNR - ITB, Bari
Contact Information
phone
0805929664
fax
0805929690
RESEARCH AREA
knowledge base management,biological data integration,biological data modelling,IT-ICT technology
RESEARCH ACTIVITY
- design, implementation and maintenance of specialized biological databases developed in collaboration with internal or other research groups;
- management and integration of large amounts of biological data (BigData) through the development and implementation of data-warehouses and other data integration tools;
- development of bioinformatics pipelines for the analysis of Next Generation Sequencing (NGS) data, in particularly for trascriptomics studies, both coding and non-coding;
- development of WEB platforms and interfaces for the pipelines and software developed in the institute.
- management and integration of large amounts of biological data (BigData) through the development and implementation of data-warehouses and other data integration tools;
- development of bioinformatics pipelines for the analysis of Next Generation Sequencing (NGS) data, in particularly for trascriptomics studies, both coding and non-coding;
- development of WEB platforms and interfaces for the pipelines and software developed in the institute.
SELECTED PUBLICATIONS
- M.Liguori, N.Nuzziello, F.Licciulli, A.Consiglio, M.Simone, R.G.Viterbo, T.M.Creanza, N.Ancona, C.Tortorella, L.Margari, G.Grillo, P.Giordano, S.Liuni, M.Trojano; Combined microRNA and mRNA expression analysis in pediatric multiple sclerosis: an integrated approach to uncover novel pathogenic mechanisms of the disease, Human Molecular Genetics, Volume 27, Issue 1, 1 January 2018, Pages 66–79, https://doi.org/10.1093/hmg/ddx385
- Pannarale P, Catalano D, De Caro G, Grillo G, Leo P, Pappadà G, Rubino F, Scioscia G and Licciulli F. GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database. BMC Bioinformatics (2012)
- M.Santamaria, B.Fosso, A.Consiglio, G.De Caro, G.Grillo, F.Licciulli, S.Liuni, M.Marzano, D.Alonso-Alemany, G.Valiente, G.Pesole; Reference databases for taxonomic assignment in metagenomics, Briefings in Bioinformatics, Volume 13, Issue 6, 1 November 2012, Pages 682–695, https://doi.org/10.1093/bib/bbs036
- G.Pesole, S.Liuni, G.Grillo, F.Licciulli, F.Mignone, C.Gissi, and C.Saccone. UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res (2002)
- F.Licciulli, D.Catalano, D.D'Elia, V.Lorusso and M.Attimonelli. KEYnet: a keywords database for biosequences functional organization. Nucleic Acids Research (1999)
- Pannarale P, Catalano D, De Caro G, Grillo G, Leo P, Pappadà G, Rubino F, Scioscia G and Licciulli F. GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database. BMC Bioinformatics (2012)
- M.Santamaria, B.Fosso, A.Consiglio, G.De Caro, G.Grillo, F.Licciulli, S.Liuni, M.Marzano, D.Alonso-Alemany, G.Valiente, G.Pesole; Reference databases for taxonomic assignment in metagenomics, Briefings in Bioinformatics, Volume 13, Issue 6, 1 November 2012, Pages 682–695, https://doi.org/10.1093/bib/bbs036
- G.Pesole, S.Liuni, G.Grillo, F.Licciulli, F.Mignone, C.Gissi, and C.Saccone. UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002. Nucleic Acids Res (2002)
- F.Licciulli, D.Catalano, D.D'Elia, V.Lorusso and M.Attimonelli. KEYnet: a keywords database for biosequences functional organization. Nucleic Acids Research (1999)
