.jpg#/media/File:Sella_del_Diavolo_2_(Cagliari).jpg "Capo Sant'Elia - Cagliari")
#/media/File:Cagliari_municipio_viaroma.jpg "City hall - Cagliari")
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1214th Annual Meeting of the Bioinformatics Italian Society
July 5-7, 2017 Cagliari, Italy
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July 3td – Satellite events |
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09:15 - 12:15 |
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14:30 - 18:30 |
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July 4th – Satellite events |
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09:00 - 13:00 |
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14:00 – 18:30 |
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July 5th – Satellite events |
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09:00 - 13:30 |
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09:00 - 13:30 |
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July 5th |
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10:00 - 14:30 |
Registration |
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13:30 - 14:30 |
Welcome party |
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14:30 - 14:45 |
Opening remarks
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14:45 |
Session 1: Disease Genomics and Next Generation Sequencing |
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14:45 - 15:30 |
Preparata Lecture – Andrew C.R. Martin Effects of mutation and prediction of pathogenicity and phenotype |
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15:30 - 15:45 |
The impact of an in-house Italian exome database for variant prioritization. Diaconu E, Onano S, Atzeni R, Cossu C, Cuccuru G, Cusano R, Oppo M, Zara I, Angius A, Crisponi L, Fotia G, Uva P. |
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15:45 - 16:00 |
Taxonomic classification of host-associated microbiome from shotgun metagenomics data using MetaShot. Fosso B, Santamaria M, Pesole G. |
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16: 00 - 16:15 |
Discovering rare causative variants in undiagnosed diseases exploiting VarGenius an automated tool for variants discovery and annotation. Musacchia F, Mutarelli M, Ciolfi A, Pinelli M, Torella A, Castello L , Tartaglia M, Banfi S, Nigro V. |
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16:15 - 16:30 |
Use of RNA-seq data to detect alternative polyadenylation events and characterize the effect of genetic variants on its regulation. Mariella E, Grassi E, Gilotto S, Provero P. |
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16:30 - 16:45 |
Personalized assessment of response to induction chemo-therapy in patients with high-risk neuroblastoma Cangelosi D, Morini M, Zanardi N, Luksch R, Sementa AR, Varesio L |
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16:45 - 17:00 |
Presentation of BITS 2018 Calogero R, Cordero F. |
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17:00 - 19:00 |
BITS Assembly |
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July 6th |
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09:00 |
Session 2: Protein structure and function |
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09:00 - 09:45 |
BITS Lecture: Manuela Helmer Citterich RNA secondary structure: a key for molecular function |
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09:45 - 10:00 |
Bioinformatics of Metalloproteins Andreini C, Banci L, Rosato A. |
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10:00 - 10:15 |
Identification of molecular determinants of CXCR3-gliadin-mediated triggering of intestinal permeability. Carisetti M, Moscatelli M, Longeri M, Milanesi L, Mezzelani A, Chiappori F. |
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10:15 - 10:30 |
Simulating the interactions of a novel cephalosporin derivative with different betalactamases. Verdino A, Zollo F, Soriente A, De Rosa M, Marabotti A. |
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10:30 - 10:45 |
Coloring protein darkness. Necci M, Piovesan D, Tosatto SCE. |
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10:45 - 12:00 |
Poster Session – Coffee Break |
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12:00 |
Session 3: Systems Biology |
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12:00 - 12:15 |
LASSIE: a GPU-based large-scale simulator of biological systems Tangherloni A, Nobile MS, Besozzi D, Mauri G, Cazzaniga P. |
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12:15 - 12:30 |
Insights from de novo transcriptome analysis on molecular response of two benthic diatoms on sea urchins Paracentrotus lividus Ruocco N, Costantini S, Zupo V, Romano G, Ianora A, Fontana A, Costantini M. |
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12:30 - 12:45 |
Systems Biology approaches investigating metabolic heterogeneity, fitness function definition and relationship between metabolic flux and metabolite concentration. Colombo R, Damiani C, Di Filippo M, Maspero D, Pescini D, Mauri G. |
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12:45 - 13:00 |
A systems biology approach to study the correlation between Arsenicals and Bladder Cancer. Polo A, Crispo A, Cerino P, De Petro G, Ciliberto G, Montella M, Budillon A, Costantini S. |
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13:00 - 14:00 |
Lunch |
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14:00 |
Session 4: Algorithms for Bioinformatics |
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14:00 - 14:45 |
Invited speaker – Paolo Missier Preserving the currency of genomics outcomes over time through selective re-computation: model and initial findings |
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14:45 - 15:00 |
Using φ-d diagrams for discovering variable importance in bioinformatics. Armano G, Giuliani A. |
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15:00 - 15:15 |
GARS: a clustering-based Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets. Chiesa M, Piacentini L, Colombo GI. |
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15:15 - 15:30 |
CASC: Classification Analysis of Single Cell Sequencing Data. Alessandri L, Beccuti M, Calogero RA. |
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15:30 - 15:45 |
REDItools 2.0: RNA editing detection in minutes on HPC infrastructures. Flati T, Gioiosa S, Chillemi, G, Pesole G, Castrignanò T, Picardi E. |
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15:45 - 16:00 |
Findings from the Fourth Critical Assessment of Genome Interpretation, a community experiment to evaluate phenotype prediction. Andreoletti G, Hoskins RA, Moult J , Brenner SE, CAGI Participants. |
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16:00 - 16:15 |
GLAlign: a novel local alignment algorithm exploiting global alignment preprocessing Milano M, Guzzi PH, Cannataro M. |
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16:15 - 20:30 |
Social Activities |
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20:30 - 23:00 |
Social Dinner |
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July 7th |
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09:00 |
Session 5: Databases and Big Data application in Bioinformatics |
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09:00 - 09:45 |
Invited speaker – Dominik Heider Computational Approaches for MDx Applications: From Academia to Industry |
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09:45 - 10:00 |
Integrating genomic data information in EHR, a structured approach. Mascia C, Uva P, Zanetti G. |
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10:00 - 10:15 |
Leveraging Stream Processing Technology for Genomics. Versaci F, Pireddu L, Zanetti G. |
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10:15 - 10:30 |
CAMUR-Web: A classification software and a big knowledge base for gene expression data of cancer. Weitschek E, Di Lauro S , Cappelli E, Felici G, Bertolazzi P. |
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10:30 - 10:45 |
Automating Galaxy Workflow Testing. Piras ME, Pireddu L, Zanetti G. |
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10:45 - 11:00 |
HPC bioinformatics resources for ELIXIR scientific community Gioiosa S, Flati T, D’Antonio M, Zambelli F, Chiara M, Picardi E., Pesole G, Castrignanò T,Chillemi G. |
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11:00 - 11:45 |
Poster Session - Coffee Break |
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11:45 |
Session 6: Molecular Evolution |
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11:45 - 12:30 |
Invited speaker – Alexander Kel “Walking pathways”, cancer and evolution |
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12:30 - 12:45 |
Evolutionary rewiring of the human regulatory network by waves of genome expansion. Marnetto D, Molineris I, Mantica F, Grassi E, Pesando I, Provero P. |
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12:45 - 13:00 |
CpG methylation detection of human mtDNA by nanopore sequencing Diroma MA, Picardi E, Pesole G. |
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13:00 - 14:00 |
Lunch |
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14:00 |
Session 7: Genome 3D: Bioinformatics, computing infrastructure and opportunities for Chromatin Conformation Analysis |
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14:00 - 14:45 |
Invited speaker – Pietro Liò Comparative analysis of deep learning architectures for multiomic inference |
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14:45 - 15:00 |
Comparison of computational methods for the analysis of Hi-C data. Forcato M, Nicoletti C, Pal K, Livi CM, Ferrari F, Bicciato S. |
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15:00 - 15:15 |
Transcriptional up-regulation and conformation differences in D. melanogaster dosage compensation of chromosome X. Pal K, Forcato M , Sexton T , Cavalli G , Ferrari F. |
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15:15 - 15:30 |
3D Chromatin structure estimation from Chromosome Conformation Capture data. Caudai C, Salerno E, Zoppè M, Tonazzini A. |
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15:30 - 16:00 |
Conclusions – Giuliano Armano, Luciano Milanesi |
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July 8th – Satellite events |
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09.00 - 11:00 |
Tutorial - Modeling transcription regulation for system medicine of common human diseases |
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11:30 - 13:30 |
Tutorial - Workflow management of bioinformatics data using Orange |
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