| 26 June | |
| 09:00 - 13:00 |
Workshop
BITS2019-ANALYSIS OF BIG OMICS DATA
|
| 13:00 |
Registration and poster hang-up
|
| 14:00 |
Opening remarks
- Prof. Leoluca Orlando, Mayor of Palermo
- Ing. Giuseppe De Pietro, CNR-ICAR Director
- Prof. Livan Fratini, University of Palermo Pro-rector for research
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Systems Biology, Biological data integration and Biological Networks chair(s) Barillot, La Paglia |
| 14:15 - 15:00 |
Emmanuel Barillot
invited speaker Some new challenges in computational molecular oncology
|
| 15:00 |
Gaia Ceddia
Network-based approach to identify new indications for existing drugs in the DrugBank database
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| 15:15 |
Paolo Mignone
Transfer Learning for Gene Network Reconstruction
|
| 15:30 |
Marco Del Giudice
Integrative analysis of multi-Omics data reveals that the dysregulation of splicing-related proteins in prostate cancer is controlled by FOXA1
|
| 15:45 |
Stefano Caruso
Integrated multi-omics data analysis to identify therapeutic vulnerabilities in liver cancer cell lines.
|
| 16:00 |
Davide Cangelosi
PIPE-T: A new Galaxy tool for analyzing RT-qPCR expression data
|
| 16:15 |
Claudia Caudai
Chromatin 3D reconstruction with ChromStruct: a method integrating Hi-C, ChIP-Seq and RNA-Seq data
|
| 16:30 - 17:00 |
Coffee Break and Poster Session
|
| 17:00 - 20:00 |
BITS members meeting
|
| 27 June | |
Gene regulation, proteomics, transcriptomics and epigenomics chair(s) Fiannaca, La Rosa |
| 09:30 |
Greta Romano
Exploiting machine learning techniques for genes signature discovery from single cell data
|
| 09:45 |
Giovanna Rosone
Metagenomic analysis through the eBWT
|
| 10:00 |
Castrense Savojardo
A deep-learning method for predicting internal mitochondrial localization of proteins
|
| 10:15 |
Elisa Mariella
The length of the expressed 3’ UTR is an intermediate molecular phenotype linking genetic variants to complex diseases
|
| 10:30 |
Eugenio Del Prete
FROM GEENA2 TO GEENAR: A USER FRIENDLY WEB TOOL FOR MALDI-TOF MASS SPECTRA MANAGEMENT
|
| 10:45 - 11:00 |
Presentation of BITS 2020
|
| 11:00 - 11:30 |
Coffee Break and Poster Session
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Bioinformatics challenge in precision medicine chair(s) Bicciato, Urso |
| 11:30 - 12:15 |
Silvio Bicciato
invited speaker Integrative bioinformatics for precision medicine
|
| 12:15 |
Valentina Bravatà
A radiogenomic approach to improve personalized radiation treatments.
|
| 12:30 |
Arnaud Ceol
An overview of the clinical bioinformatics landscape in Italy
|
| 12:45 |
Barbara Di Camillo
MAST: A MULTI-AGENT BASED SPATIO-TEMPORAL MODEL OF THE INTERACTION BETWEEN IMMUNE SYSTEM AND TUMOR GROWTH
|
| 13:00 |
Massimo La Rosa
Extending miRTissue web service with ceRNA-ceRNA interactions analysis
|
| 13:15 - 14:15 |
Lunch
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Algorithms in Bioinformatics chair(s) Sharan, Lo Bosco |
| 14:15 - 15:00 |
Roded Sharan
invited speaker Harnessing protein networks to elucidate disease mechanisms
|
| 15:00 |
Isabella Mendolia
Virtual Screening of Molecular Fingerprint through Convolutional Neural Networks
|
| 15:15 |
Riccardo Rizzo
A Deep Neural network for extracting features from DNA nucleosome-forming sequences
|
| 15:30 |
Simone Tiberi
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
A Bayesian hierarchical model for differential splicing accounting for sample-to-sample variability and mapping uncertainty
|
| 15:45 |
Eirini Stamoulakatou
Identification of active Mutational Signatures on transcript factor binding profiles
|
| 16:00 |
Luca Denti
MALVA: genotyping by Mapping-free ALlele detection of known VAriants
|
| 16:15 |
Marco Beccuti
A computational model for studying the effects of different vaccine policies on pertussis epidemiology
|
| 16:30 - 17:00 |
Coffee Break and Poster Session
|
| 17:00 - 18:30 |
YOUNG BITS Event
|
| 19:00 - 20:00 |
Social Activity
|
| 20:15 |
Social Dinner
|
| 28 June | |
Biological Big Data Analytics chair(s) Giancarlo, Rizzo |
| 09:00 - 09:45 |
Raffaele Giancarlo
invited speaker DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes
|
| 09:45 |
Marco Antonio Tangaro
Laniakea@ReCaS: an ELIXIR-IT Galaxy on-demand cloud service
|
| 10:00 |
Silvio Tosatto
ModiDB 3.0: intrinsic disorder annotation and integration in UniProtKB
|
| 10:15 |
Claudia Coronnello
The ComiR web-tool ready for an upgrade: the detection of new features to improve the prediction of microRNA targets
|
| 10:30 |
Simona E. Rombo
Tripartite graph clustering for the prediction of lncRNA-disease associations
|
| 10:45 |
Salvatore Micciche'
Nested partitions from hierarchical clustering statistical validation
|
| 11:00 - 11:45 |
Coffee Break and Poster Session
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Structural Bioinformatics and mulecular dynamic Simulations chair(s) Facchiano, Chiappori |
| 11:45 |
Lorenzo Di Rienzo
A moments-based analysis of shape and electrostatics in molecular recognition: the case of antibodies.
|
| 12:00 |
Qingzhen Hou
SOLart: a structure-based method to predict protein solubility and aggregation
|
| 12:15 |
Federica Chiappori
CXCL10-CXCR3 complex formation, different isoforms result in different binding modes
|
| 12:30 |
Deborah Giordano
Molecular dynamics analysis of MTGase and KalbTGase enzymes
|
| 12:45 |
Romina Oliva
How we Achieved the First Position in the Top-1 and Top-10 Rankings of the CASP13-CAPRI46 Scoring Experiment
|
| 13:00 - 14:00 |
Lunch
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