Program
13th Annual Meeting of the Bioinformatics Italian Society
June 15-17, 2016, University of Salerno, Italy
| June 14th | Satellite event | |
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Uses and Applications of Crystallographic Data in Structural Chemistry and Drug Discovery Laboratorio Reti, Building F2, floor -1 |
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| June 15th | Satellite event | |
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 The material of the workshop can be found here Aula P7, Building F3, floor 1 |
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| June 15th | BITS Tutorials | |
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| Registration (for participants to tutorials and ELIXIR Workshop) | ||
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Tutorial 1: HADDOCK Laboratorio Turing, Building F, "stecca 7", floor 2 |
Tutorial 2: iMir Laboratorio P12 sound, Building F3, floor 1 |
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| Light lunch (in the meeting area) | ||
| June 15th | |||
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| Registration and poster hang-up | |||
| Opening remarks | |||
| Session 1: Genomics and Transcriptomics (Chairs: Manuela Helmer-Citterich and Paolo Romano) | |||
 Preparata Lecture - Invited speaker Janusz Bujnicki Title: Computational modeling and design of RNA 3D structure and protein-RNA complexes |
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Chawla M, Oliva R, Bujnicki JM, Cavallo L Title: Impact of modified nucleobases on base pairing in RNA experimental structures |
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Dal Molin A, Lorenzi P, Romanelli MG, Malerba G Title: Searching for sequence motifs that affect splicing of exons regulated by RBM20 |
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Ambrosino L, Bostan H, Ruggieri V, Chiusano ML Title: An integrated multi-level comparison highlights common aspects and specific features between distantly-related species Tomato and Grapevine |
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| Coffee Break | Poster hang-up | ||
| Assemblea Straordinaria BITS | |||
| Assemblea Ordinaria BITS | |||
| June 16th | ||
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| Session 2: Special Session: Big Data Management, Modeling and Computing (Chairs: Marco Masseroli and Giancarlo Mauri) | ||
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Highlight lecture Stefano Ceri Title: Data-Driven genomic computing: Making sense of the signals from the genome |
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Prezza N, Policriti A Title: Algorithms and data structures for the compression and indexing of genomic big data |
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Cumbo F, Fiscon G, Ceri S, Masseroli M, Weitschek E Title: TCGA2BED: converting and querying The Cancer Genome Atlas |
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Montanari P, Ceol A, Bartolini I, Ciaccia P, Patella M, Ceri S, Masseroli M Title: Discovering similar (epi)genomics feature patterns in multiple genome browser tracks |
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Bosotti R, Melloni GM, Ukmar G, D’aiuto F, Vescovi M, Rossi P, Pirchio MR, Callari M, Leone A, Somaschini A, Cesarini M, Raddrizzani L, Della Vedova G, Dugo M, Canevari S, Zambon A, Corrao G, Nepa G, Daidone MG, Pettenella M, Isacchi A Title: PATRI: an integrated platform for genomics data analysis |
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Cordero F, Beccuti M, Genuardi E, Romano G, Calogero RA, Ladetto M, Ferrero S Title: Hash Clone: a new tool to quantify the minimal residual disease during patient follow-up |
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Poster Session List of accepted posters |
Coffee Break | Session 3: Next-Generation Sequencing (Chairs: Luciano Milanesi and Alessandro Weisz) |
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Invited speaker Susanna-Assunta Sansone Title: On community-standards, data curation and scholarly communication |
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Picardi E, D’Erchia AM, Pesole G Title: Single Cell RNAseq reveals RNA editing heterogeneity in human brain |
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Geraci F, Manzini G, Genovese LM, D'Aurizio R, Pellegrini M Title: A tool for genotyping variable length tandem repeats in high throughput sequencing data |
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Granata I, Sangiovanni M, Guarracino MR Title: Var2GO: a web-based tool for gene variants annotation and selection |
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Via A
Title: Elixir Workshop results: Ten simple rules to make your teaching (more) effective |
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| Lunch (in the poster room) | ||
| Session 4: Protein Structure and Function (Chairs: Francesca Cordero and Anna Marabotti) | ||
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Invited speaker Alexandre Bonvin Title: Structure, affinity and specificity riddles in biomolecular interactions |
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Scafuri B, Marabotti A, Carbone V, Minasi P, Dotolo S, Facchiano A Title: Computational screening and bioinformatics functional analysis for the investigation of apple polyphenols chemopreventive effects in cancer |
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Corrada D, Bonati L Title: Modelling the intertwined network of PPIs along the AhR:ARNT dimer. |
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Balasco N, Barone D, Sandomenico A, Iaccarino E, Ruvo M, Vitagliano L Title: Structural characterization of the Hepatitis C Virus E2 protein: computational and experimental approaches |
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Paladin L, Richard F, Kajava AV, Tosatto SCE Title: Tandem Repeat proteins at a glance: function, disease and role in protein-protein interaction networks |
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| Social Activities | ||
| June 17th | ||
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| Session 5: Special Session: Clinical Bioinformatics (Chairs: Roberta Bosotti and Davide Cangelosi) | ||
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Highlight lecture Tommaso Mazza Title: Multilayered transcriptional crosstalks are sustained by cooperating micro-societies in human colorectal cancer |
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Spinozzi G, Calabria A, Caravagna G, Graudenzi A, Ramazzotti D, Antoniotti M, Mauri G, Montini E Title: Confirming and investigating the role of breast cancer PIK3CA-ERBB2 genes in anti-cancer drug-resistance with a new framework for the inference of cancer progression graphs using vector integration sites data |
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Izzo M, Cangelosi D, Pezzolo A, Morini M, Varesio L Title: XTENS: a neuroblastoma copy number variation repository at the BIT-Gaslini biobank |
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Paladin L, Necci M, Babbi G, Fiscon G, Russo F Title: RSG Italy |
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Pesole G
Title: ELIXIR-ITA |
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Armano G Title: Presentation of BITS2017 |
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Poster Session List of accepted posters |
Coffee Break | |
| Session 6: Algorithms for Bioinformatics and Systems Biology (Chairs: Giuliano Armano and Roberto Tagliaferri) | ||
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Invited speaker Michael M. Hoffman Title: Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet |
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Marini S, Demartini A, Vitali F, Bellazzi R, Akutsu T Title: Data Fusion for cleavage target prediction |
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Colaprico A, Silva TC, Olsen C, Garofano L, Cava C, Garolini D, Sabedot T, Malta TM, Pagnotta SM, Castiglioni I, Ceccarelli M, Bontempi G, Noushmehr H Title: TCGAbiolinks: An R/Bioconductor package for integrative analysis with TCGA data |
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Tomasi F, Squillario M, Bagnara D, Verri A, Barla A Title: A graph-based method to evaluate clonally related Immunoglobulins |
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Pagliarini R, Castello R, Napolitano F, Borzone R, Annunziata P, Mandrile G, De Marchi M, Brunetti-Pierri N, di Bernardo D Title: A computational systems-level approach to decipher inborn errors of metabolism |
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| Lunch (in the poster room) | ||
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Round Table:
Teaching Bioinformatics: state-of-the-art and new ideas (Joint BITS - Elixir-ITA event) |
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| Conclusions | ||
unisa.it