algorithms,biological data integration,biological data modelling,machine learning,network systems,sequence analysis,system biology

- ALAIMO S., Giugno R, Acunzo M, Veneziano D, Ferro A, Pulvirenti A (2016). Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. ONCOTARGET, vol. 7; p. 54572-54582, ISSN: 1949-2553, doi: 10.18632/oncotarget.9788
- ALAIMO S., Giugno R, Pulvirenti A (2016). Recommendation Techniques for Drug–Target Interaction Prediction and Drug Repositioning. In: Oliviero Carugo, Frank Eisenhaber. Data Mining Techniques for the Life Sciences. vol. 1415, p. 441-462, , doi: 10.1007/978-1-4939-3572-7_23
- Sardina D S, ALAIMO S., Ferro A, Pulvirenti A, Giugno R (2016). A novel computational method for inferring competing endogenous interactions. BRIEFINGS IN BIOINFORMATICS, ISSN: 1467-5463, doi: 10.1093/bib/bbw084
- Nigita G, ALAIMO S., Ferro A, Giugno R, Pulvirenti A (2015). Knowledge in the investigation of A-to-I RNA editing signals. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, ISSN: 2296-4185, doi: 10.3389/fbioe.2015.00018
- ALAIMO S., Bonnici V, Cancemi D, Ferro A, Giugno R, Pulvirenti A (2015). DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference. BMC SYSTEMS BIOLOGY, vol. 9, ISSN: 1752-0509, doi: 10.1186/1752-0509-9-S3-S4
- Eduati F, Mangravite L, Wang T, Tang H, Bare J, Huang R, Norman T, Kellen M, Menden M, Yang J, Zhan X, Zhong R, Xiao G, Xia M, Abdo N, Kosyk O, Friend S, Stolovitzky G, Dearry A, Tice R, Huang R, Xia M, Simeonov S, Abdo N, Kosyk O, Rusyn I, Wright F, Wang T, Tang H, Zhan X, Yang J, Zhong R, Xiao G, Xie Y, Tang H, Yang J, Wang T, Xiao G, Xie Y, ALAIMO S., Amadoz A, Ammad-ud-din M, Chloé-Azencott A, Bacardit J, Barron P, Bernard E, Beyer A, Bin S, van Bömmel A, Borgwardt K, Brys A, Caffrey B, Chang J, Chang J, Christodoulou E, Clément-Ziza M, Cohen T, Cowherd M, Demeyer S, Dopazo J, Elhard J, Falcao A, Ferro A, Friedenberg D, Giugno R, Gong Y, Gorospe J, Granville C, Grimm D, Heinig M, Hernansaiz R, Hochreiter S, Liang-Huang C, Huska M, Jiao Y, Klambauer G, Kuhn M, Kursa M, Kutum R, Lazzarini N, Lee I, Leung M, Lim K W, Liu C, López F L, Mammana A, Mayr A, Michoel T, Mongiovì M, Moore J, Narasimhan R, Opiyo S, Pandey G, Peabody A, Perner J, Pulvirenti A, Rawlik K, Reinhardt S, Riffle C, Ruderfer D, Sander A, Savage R, Scornet E, Sebastian-Leon P, Sharan R, Simon-Gabriel C, Stoven V, Sun J, Tang H, Teixeira A, Tenesa A, Jean-Vert P, Vingron M, Wang T, Walter T, Whalen S, Wisniewska Z, Wu Y, Xiao G, Xie Y, Xu H, Yang J, Zhan X, Zhang S, Zhao J, W Zheng J, Zhong R, Ziwei D, Friend S, Dearry A, Simeonov A, Raymond R Tice, Rusyn I, Wright F, Stolovitzky G, Xie Y, Saez-Rodriguez J (2015). Prediction of human population responses to toxic compounds by a collaborative competition. NATURE BIOTECHNOLOGY, vol. 33; p. 933-940, ISSN: 1087-0156, doi: 10.1038/nbt.3299
- ALAIMO S., Giugno R, Pulvirenti A (2014). ncRNA-Disease association prediction through tripartite network based inference. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, ISSN: 2296-4185, doi: 10.3389/fbioe.2014.00071
- ALAIMO S., Pulvirenti A, Giugno R, Ferro A (2013). Drug-target interaction prediction through domain-tuned network-based inference. BIOINFORMATICS, vol. 29; p. 2004-2008, ISSN: 1367-4803, doi: 10.1093/bioinformatics/btt307