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Luciano Milanesi
Socio Ordinario
Ricercatore
Istituto Tecnologie Biomediche CNR
Contact Information
RESEARCH AREA
algorithms,biological data integration,biological data modelling,biological ontologies,comparative genomics,knowledge base management,IT-ICT technology,machine learning,network systems,sequence analysis,structural genomics,structure analysis,system biology
RESEARCH ACTIVITY
Bioinformatics, System Medicine,System Biology
SELECTED PUBLICATIONS
- Mezzelani A, Landini M, Facchiano F, Raggi ME, Villa L, Molteni M, De Santis B, Brera C, Caroli AM, Milanesi L, Marabotti A. Environment, dysbiosis, immunity and sex-specific susceptibility: A translational hypothesis for regressive autism pathogenesis. Nutr Neurosci. 2014 Jan 21. [PubMed PMID: 24621061.

- Manconi, Andrea; Orro, Alessandro; Manca, Emanuele; Armano, Giuliano; Milanesi, Luciano (2014) A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units. in BMC Bioinformatics 2014, 15(Suppl 1):S10 doi:10.1186/1471-2105-15-S1-S10

- F.Viti, S.Scaglione, A. Orro, L.Milanesi (2014) Guidelines for managing data and processes in bone and cartilage tissue engineering. BMC Bioinformatics 2014, 15(Suppl 1):S14 doi:10.1186/1471-2105-15-S1-S14

- Di Gennaro, P; Zampolli, J; Presti, I; Cappelletti, M; D'Ursi, P; Orro, A; Mezzelani, A; Milanesi, L (2014) Genome Sequence of Rhodococcus opacus Strain R7, a Biodegrader of Mono- and Polycyclic Aromatic Hydrocarbons. Genome Announc. July/August 2014 vol. 2 no. 4 e00827-14. doi: 10.1128/genomeA.00827-14

- Manconi, Andrea; Orro, Alessandro; Manca, Emanuele; Armano, Giuliano; Milanesi, Luciano (2014) GPU-BSM: A GPU-Based Tool to Map Bisulfite-Treated Reads. PloS one: May 19, 2014 doi: 10.1371/journal.pone.0097277

- Bocchio-Chiavetto, Luisella; Maffioletti, Elisabetta; Bettinsoli, Paola; Giovannini, Caterina; Bignotti, Stefano; Tardito, Daniela; Corrada, Dario; Milanesi, Luciano; Gennarelli, Massimo (2013). Blood microRNA changes in depressed patients during antidepressant treatment. European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. 08/2012;

- Vezzoli, Giuseppe; Terranegra, Annalisa; Aloia, Andrea; Arcidiacono, Teresa; Milanesi, Luciano; Mosca, Ettore; Mingione, Alessandra; Spotti, Donatella; Cusi, Daniele; Hou, Jianghui; Hendy, Geoffrey N.; Soldati, Laura (2013). Decreased Transcriptional Activity of Calcium-sensing receptor Gene Promoter 1 Is Associated With Calcium Nephrolithiasis in The Journal of clinical endocrinology and metabolism. doi: 10.1210/jc.2013-1834

- M Cappelletti, P Di Gennaro, P D'Ursi, A Orro, A Mezzelani, M Landini, S Fedi, D Frascari, A Presentato, D Zannoni, L Milanesi. Genome Sequence of Rhodococcus sp. Strain BCP1, a Biodegrader of Alkanes and Chlorinated Compounds.Genome announcements 01/2013; 1(5). doi:10.1128/genomeA.00657-13

- Cichero, Elena; D'Ursi, Pasqualina; Moscatelli, Marco; Bruno, Olga; Orro, Alessandro; Rotolo, Chiara; Milanesi, Luciano; Fossa, Paola (2013) Homology Modeling, Docking Studies and Molecular Dynamic Simulations Using Graphical Processing Unit Architecture to Probe the Type-11 Phosphodiesterase Catalytic Site: A Computational Approach for the Rational Design of Selective Inhibitors in Chemical biology & drug design doi: 10.1111/cbdd.12193.

- Mosca, Ettore; Milanesi, Luciano (2013) Network-based analysis of omics with multi-objective optimization. in Molecular BioSystems. 2013,9, 2971-2980 doi: 10.1039/C3MB70327D

- Merelli, Ivan; Lio, Pietro; Milanesi, Luciano (2013) NuChart: An R Package to Study Gene Spatial Neighbourhoods with Multi-Omics Annotationsi. In PloS one. doi: 10.1371/journal.pone.0075146

- Merelli I., Calabria A., Cozzi P. A., Viti F., Mosca E. and Milanesi L. SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS. BMC Bioinfomatics 08/2013; 14(1). doi:10.1186/1471-2105-14-S1-S9.

- Chiappori, Federica; Merelli, Ivan; Milanesi, Luciano; Marabotti, Anna (2013) Static and dynamic interactions between GALK enzyme and known inhibitors: Guidelines to design new drugs for galactosemic patients. in European journal of medicinal chemistry doi: 10.1016/j.ejmech.2013.02.021

- Mosca E., Alfieri R., Maj C., Bevilacqua A., Canti G., Milanesi L. Computational Modelling of the Metabolic States Regulated by the Kinase Akt. Frontiers in Physiology 2012, 3:418 DOI: 10.3389/fphys.2012.00418