Program
| Thursday, 01 July | |
| 09:30 - 09:45 | Welcome |
| 09:45 - 10:30 | Pedro Beltrao Preparata Lecture - Invited Speaker Disease and functional relevance of human protein phosphorylation |
Systems Biology chair(s) Giancarlo Mauri |
|
| 10:30 | Serena Dotolo |Oral Presentation| Molecular mechanisms involved in oncological diseases investigated by a new multiple network-based bioinformatics pipeline |
| 10:45 | Federica Conte |Oral Presentation| The New Paradigm of Network Medicine to Analyze Breast Cancer Phenotypes |
| 11:00 | Bruno Giovanni Galuzzi |Oral Presentation| Single-Cell reaction expression analysis as a bridge between transcriptomics and fluxomics |
| 11:15 - 11:45 | Break with Poster Session Poster Sessions page |
| 11:45 - 12:30 | Annalisa Marsico invited speaker Machine learning models of post-transcriptional regulation of RNAs |
Gene regulation, transcriptomics and epigenomics chair(s) Roberta Bosotti |
|
| 12:30 | Dario Righelli |Oral Presentation| SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor |
| 12:45 | Gerardo Pepe |Oral Presentation| Variation in the co-expression profile highlights the loss of miRNA-mRNA regulation in several cancers |
| 13:00 | Giovanni Motterle |Oral Presentation| Stardust: spatial tranScripTomics data analysis through space awARe modularity optimization baseD clUSTering. |
| 13:15 | Silvia Cascianelli |Oral Presentation| Investigating transcript isoform RNA-seq data and machine learning techniques for breast cancer subtyping |
| 13:30 - 14:30 | Lunch |
Algorithms for Bioinformatics and Biological Networks chair(s) Francesca Cordero |
|
| 14:30 | Manuel Tognon |Oral Presentation| GRAFIMO: variant and haplotype aware motif scanning on pangenome graphs |
| 14:45 | Vincenzo Bonnici |Oral Presentation| A methodology for capturing pangenomic content among incomplete genomes |
| 15:00 | Giulia Pais |Oral Presentation| ISAnalytics: a new bioinformatic R package for integrated analysis of viral integration sites in gene therapy applications |
| 15:15 | Matteo Comin |Oral Presentation| Indexing K-mers in Linear Space with Application to SNP Detection |
| 15:30 - 16:00 | Break with Poster Session Poster Sessions page |
| 16:00 | Assemblea soci BITS |
| Friday, 02 July | |
| 09:00 - 09:45 | Alex Graudenzi Invited Speaker Characterizing the evolution of SARS-CoV-2 and the generation of genomic variants from sequencing data of viral samples |
Bioinformatics challenges in the SARS-Cov-2/COVID-19 pandemic chair(s) Flavio Licciulli |
|
| 09:45 | Arianna Consiglio |Oral Presentation| CoV-ncRNASig - A tool for the prediction of ncRNA signatures in Coronavirus infection |
| 10:00 | Luana Licata |Oral Presentation| A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection. |
| 10:15 - 10:30 | Marco Carraro Invited Speaker COVID-19 Data Portal Italy |
| 10:30 - 11:15 | Jacques van Helden Invited Speaker Investigating the origins of SARS-CoV-2 in coronavirus sequences |
| 11:15 - 11:45 | Break with Poster Session Poster Sessions page |
Multiomics and Single Cell Analysis chair(s) Luciano Milanesi |
|
| 11:45 | Luca Alessandrì |Oral Presentation| Sparsely Connected Autoencoders (SCA) as multi-purpose tool for single-cell RNAseq data mining. |
| 12:00 | Giacomo Baruzzo |Oral Presentation| scSeqComm: a bioinformatic tool to identify, quantify and characterize cellular communication from single cell RNA sequencing data |
| 12:15 | Giulio Caravagna |Oral Presentation| Genotyping Copy Number Alterations from single-cell RNA sequencing |
| 12:30 | Valentina Nale |Oral Presentation| Copy Number Variation inference from single-cell expression data with the R package scMuffin. |
| 12:45 | Giulio Ferrero |Oral Presentation| An integrated analysis on stool microRNA and microbial content in subjects with different dietary regimes |
| 13:00 - 14:00 | Lunch |
Miscellaneous chair(s) Andreas Zanzoni |
|
| 14:00 | Aurora Savino |Oral Presentation| Gene co-expression networks identify mediators of inter-tissue interactions |
| 14:15 | Aldo Sergi |Oral Presentation| A novel computational framework for the identification of the TD-plus phenotype in high grade serous ovarian cancer |
| 14:30 | Melania D'Angiolo |Oral Presentation| A yeast living ancestor reveals the origin of genomic introgressions |
| 14:45 - 15:15 | Break with Poster Session Poster Sessions page |
Protein structure and function chair(s) Anna Marabotti - UNISA and Dr. Rocco Caliandro - AIC-BMM |
|
| 15:15 | Giulia Babbi |Oral Presentation| A large-scale analysis of human protein missense variations collected from HUMSAVAR and ClinVar |
| 15:30 | Bernardina Scafuri |Oral Presentation| Performances evaluation of selected web tools predicting changes in protein stability |
| 15:45 | Matteo Uggeri |Oral Presentation| Computational evaluation of the synergic effect of a small molecule on Lumacaftor F508del-CFTR rescue ability |
| 16:00 - 16:45 | José Duarte Invited Speaker The PDB at 50: a history of structural bioinformatics |
| 16:45 - 17:00 | Break |
| 17:00 - 18:00 |
Teaching and training session: a syllabus for Bioinformatics
Chairs: Anna Marabotti and Roberto Marangoni
Speakers: Allegra Via and Domenica D’Elia |
| 18:00 | Conclusions and farewell |
