Program
01 July
09:30 - 09:45
Welcome
09:45 - 10:30
Pedro Beltrao
Preparata Lecture - Invited Speaker
Disease and functional relevance of human protein phosphorylation
Systems Biology
chair(s)
Giancarlo Mauri
10:30
Serena Dotolo
Molecular mechanisms involved in oncological diseases investigated by a new multiple network-based bioinformatics pipeline
10:45
Federica Conte
The New Paradigm of Network Medicine to Analyze Breast Cancer Phenotypes
11:00
Bruno Giovanni Galuzzi
Single-Cell reaction expression analysis as a bridge between transcriptomics and fluxomics
11:15 - 11:45
Break with Poster Session
Poster Sessions page
11:45 - 12:30
Annalisa Marsico
invited speaker
Machine learning models of post-transcriptional regulation of RNAs
Gene regulation, transcriptomics and epigenomics
chair(s)
Roberta Bosotti
12:30
Dario Righelli
SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor
12:45
Gerardo Pepe
Variation in the co-expression profile highlights the loss of miRNA-mRNA regulation in several cancers
13:00
Giovanni Motterle
Stardust: spatial tranScripTomics data analysis through space awARe modularity optimization baseD clUSTering.
13:15
Silvia Cascianelli
Investigating transcript isoform RNA-seq data and machine learning techniques for breast cancer subtyping
13:30 - 14:30
Lunch
Algorithms for Bioinformatics and Biological Networks
chair(s)
Francesca Cordero
14:30
Manuel Tognon
GRAFIMO: variant and haplotype aware motif scanning on pangenome graphs
14:45
Vincenzo Bonnici
A methodology for capturing pangenomic content among incomplete genomes
15:00
Giulia Pais
ISAnalytics: a new bioinformatic R package for integrated analysis of viral integration sites in gene therapy applications
15:15
Matteo Comin
Indexing K-mers in Linear Space with Application to SNP Detection
15:30 - 16:00
Break with Poster Session
Poster Sessions page
16:00
Assemblea soci BITS
02 July
09:00 - 09:45
Alex Graudenzi
Invited Speaker
Characterizing the evolution of SARS-CoV-2 and the generation of genomic variants from sequencing data of viral samples
Bioinformatics challenges in the SARS-Cov-2/COVID-19 pandemic
chair(s)
Flavio Licciulli
09:45
Arianna Consiglio
CoV-ncRNASig - A tool for the prediction of ncRNA signatures in Coronavirus infection
10:00
Luana Licata
A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection.
10:15 - 10:30
Marco Carraro
Invited Speaker
COVID-19 Data Portal Italy
10:30 - 11:15
Jacques van Helden
Invited Speaker
Investigating the origins of SARS-CoV-2 in coronavirus sequences
11:15 - 11:45
Break with Poster Session
Poster Sessions page
Multiomics and Single Cell Analysis
chair(s)
Luciano Milanesi
11:45
Luca Alessandrì
Sparsely Connected Autoencoders (SCA) as multi-purpose tool for single-cell RNAseq data mining.
12:00
Giacomo Baruzzo
scSeqComm: a bioinformatic tool to identify, quantify and characterize cellular communication from single cell RNA sequencing data
12:15
Giulio Caravagna
Genotyping Copy Number Alterations from single-cell RNA sequencing
12:30
Valentina Nale
Copy Number Variation inference from single-cell expression data with the R package scMuffin.
12:45
Giulio Ferrero
An integrated analysis on stool microRNA and microbial content in subjects with different dietary regimes
13:00 - 14:00
Lunch
Miscellaneous
chair(s)
Andreas Zanzoni
14:00
Aurora Savino
Gene co-expression networks identify mediators of inter-tissue interactions
14:15
Aldo Sergi
A novel computational framework for the identification of the TD-plus phenotype in high grade serous ovarian cancer
14:30
Melania D'Angiolo
A yeast living ancestor reveals the origin of genomic introgressions
14:45 - 15:15
Break with Poster Session
Poster Sessions page
Protein structure and function
chair(s)
Anna Marabotti - UNISA and Dr. Rocco Caliandro - AIC-BMM
15:15
Giulia Babbi
A large-scale analysis of human protein missense variations collected from HUMSAVAR and ClinVar
15:30
Bernardina Scafuri
Performances evaluation of selected web tools predicting changes in protein stability
15:45
Matteo Uggeri
Computational evaluation of the synergic effect of a small molecule on Lumacaftor F508del-CFTR rescue ability
16:00 - 16:45
José Duarte
Invited Speaker
The PDB at 50: a history of structural bioinformatics
16:45 - 17:00
Break
17:00 - 18:00
Teaching and training session: a syllabus for Bioinformatics
Chairs: Anna Marabotti and Roberto Marangoni
Speakers: Allegra Via and Domenica D’Elia
18:00
Conclusions and farewell
Welcome to BITS 2021 virtual conference, July 1-2
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